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You are here: Home > Biology > Bioinformatics > Software

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AbOrygen : Intuitive bioinformatics
AbOrygen develops the next generation of bioinformatics software with powerful new features that simplify and improve the research work of life scientists worldwide.
http://www.aborygen.com

AcaClone pDRAW32
Freeware DNA cloning, analysis and visualization software.
http://www.acaclone.com

AceDB
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
http://www.acedb.org/

BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
http://www.biojava.org/

BioLisp.org
BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
http://www.biolisp.org

Bionconductor
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
http://www.bioconductor.org/

Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
http://www.bioperl.org

BioPython.org
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
http://www.biopython.org/

BSML - Bioinformation Sequence Markup Language
Extensible language specification and container for bioinformatic data.
http://www.bsml.org/

Computer Program for Polyphasic Taxonomy Analysis
The proBiosys suite of programs compares phenetic, chemotaxonomic and nucleic acid sequence data. Algorithms for polyphasic taxonomy are available to construct Dendrograms, the suite is simple to use.
http://www.proBiosys.com

DNA-Star - Lasergene
Commercial sequence analysis and manipulation suite for Windows and Macintosh.
http://www.dnastar.com/

Logical Depth
Accelerated sequence analysis tools for HMMsearch and Smith-Waterman.
http://www.logicaldepth.com/

LucID Professional
Software for creating interactive keys for biology, taxonomy, medicine, and agriculture.
http://www.lucidcentral.com/

Molecular Evolutionary Genetics Analysis (MEGA2) software
Provides free downloadable MEGA2 software for use in comparative sequence analysis of genetic data. Program for Win32 platforms.
http://www.megasoftware.net/

Phred/Phrap/Consed System Home Page
basecaller / assembler / sequencer finisher and related tools from the UW Genome Center.
http://www.phrap.org/

PubCrawler - An Update Alerting Service for PubMed and GenBank
Software and an online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
http://www.pubcrawler.ie

The ARB Project
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
http://www.arb-home.de